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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs146587458 chr6:24447563 G/GT 2.47E-8 479 16.38 14.92 7.43 KM Plot
THCA rs146699889 chr16:2927608 T/A 0.000209 482 15.2 16.83 15.4 KM Plot
THCA rs146723774 chr1:22436691 T/TA 3.44E-10 481 15.7 17.78 9.47 KM Plot
THCA rs1467403 chr6:133089952 T/A 5.22E-7 485 15.63 17.18 17.85 KM Plot
THCA rs1467404 chr6:133090141 A/G 2.52E-7 490 17.85 17.1 15.48 KM Plot
THCA rs146775860 chr10:81672062 GAAT/G 0 482 15.9 16.07 5.92 KM Plot
THCA rs146787397 chr11:62569105 T/TAC 7.66E-5 488 16.22 14.33 14.27 KM Plot
THCA rs146832812 chr19:43562900 T/C 0.000237 489 15.3 18.93 10.08 KM Plot
THCA rs146888233 chr2:137309974 AAAG/A 9.87E-5 473 15.32 17.55 7.8 KM Plot
THCA rs146921640 chr15:24763781 G/A 8.53E-5 485 15.67 16.4 17.83 KM Plot
THCA rs146936375 chr10:81946463 TC/T 0.000114 488 15.93 16.65 9.77 KM Plot
THCA rs146945445 chr2:48056249 G/T 1.14E-7 487 15.3 17.93 8.27 KM Plot
THCA rs147046156 chr5:81212353 T/TTCTTACATA 0.000263 487 15.93 15 27.82 KM Plot
THCA rs147088835 chr16:69857502 C/T 0.000116 485 16.07 11.18 18.18 KM Plot
THCA rs147104067 chr6:24422831 CTG/C 5.55E-15 488 16.37 14.85 11.07 KM Plot